Error interannual simulation

run / config issues
1

Hello, I have a croco (V1.1) configuration that runs well in a and old pc and I’m trying to perform the same interannual run on a new PC.

When attempting to run it on the new PC, I encounter an error with the .bry file.

ERROR in get_all_bry: can not open netCDF file ‘croco_bry.nc’.

What could be the cause of this error? I compiled without any issues on the new PC (and the same configuration runs smoothly on the older PC).

Attached is the complete output when testing the interannual run.

./run_croco_inter.bash
Getting croco from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides
Getting AGRIF_FixedGrids.in from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides
/bin/cp: no se puede efectuar `stat’ sobre ‘/home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides/AGRIF_FixedGrids.in’: No existe el archivo o el directorio
Getting croco_grd.nc from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides/CROCO_FILES
Getting croco_inter.in from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides
Getting croco_ini.nc from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides/CROCO_FILES
/bin/cp: ‘croco_ini.nc’ y ‘croco_ini.nc’ son el mismo fichero
Computing YEAR 2003 MONTH 1
Getting croco_frc_NCEP2_Y2003M1.nc from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides/CROCO_FILES
Getting croco_bry_GLORYS.nc from /home/cami/CROCO/CROCO1_1/CONFIGS/GLORYS_tides/CROCO_FILES
YEAR = 2003 MONTH = 1 DAYS = 31 DT = 200 NTIMES = 13392
Writing in croco_Y2003M1_inter.in
USING NUMTIMES = 13392
sáb 27 may 2023 16:41:08 -03
sáb 27 may 2023 16:41:08 -03
Test croco_Y2003M1.out

Warning: month not finished properly

 1  -0.9750000  -0.8600159          -4.683   -1913.604   -3826.067
 0  -1.0000000  -1.0000000          -5.000   -2223.749   -4447.499

Time splitting: ndtfast = 60 nfast = 82

Maximum grid stiffness ratios: rx0 =0.0972905551 rx1 = 2.1452012646

  GET_INITIAL -- Processing data for time =  0.7414E+05 record =   1

ERROR in get_all_bry: can not open netCDF file ‘croco_bry.nc’.

MAIN - number of records written into history file(s): 0
number of records written into restart file(s): 0
number of records written into averages file(s): 0

ERROR: Abnormal termination: netCDF INPUT

Month Y2003M1 did not work

Many thanks!
Camila

2

Hi Camila,

What script are you using to run the simulation?
Can you post your croco.in?

3

Thank you, Andres, for your response, and I apologize for the delay. I eventually stopped trying (I was attempting to run a test on a laptop with the intention of later transferring it to a server) and proceeded to run it directly on the server. Similarly, I am intrigued by the situation.

Now, having transitioned to Croco 1.3 and utilizing ERA5, I encountered a similar error when attempting to run it on the laptop again. This time, the error states that it cannot locate the ‘croco_grd’ file (which indeed is located in the supposed folder). Interestingly, the exact same configuration runs smoothly on the Ubuntu-based server.

I would like to inquire, simply to clear my doubts, about what might be occurring on the laptop (where I also have all the libraries and the model theoretically well-installed).

Iattach the ouput

./run_croco_inter.bash
Getting croco from /home/cami/CROCO/CROCO1_3/croco/UY1_3/
Getting AGRIF_FixedGrids.in from /home/cami/CROCO/CROCO1_3/croco/UY1_3/
Getting croco_grd.nc from /home/cami/CROCO/CROCO1_3/croco/UY1_3/CROCO_FILES
Getting croco_inter.in from /home/cami/CROCO/CROCO1_3/croco/UY1_3/
Getting croco_rst_Y2012M12.nc from /home/cami/CROCO/CROCO1_3/croco/UY1_3/CROCO_FILES
Computing YEAR 2013 MONTH 01
Getting croco_frc_ERA5_Y2013M01.nc from /home/cami/CROCO/CROCO1_3/croco/UY1_3/CROCO_FILES
Getting croco_blk_ERA5_Y2013M01.nc from /home/cami/CROCO/CROCO1_3/croco/UY1_3/CROCO_FILES
Getting croco_bry_GLORYS.nc from /home/cami/CROCO/CROCO1_3/croco/UY1_3/CROCO_FILES
YEAR = 2013 MONTH = 1 DAYS = 31 DT = 200 NTIMES = 0
Exact restart defined
set NUMRECINI = 1

Writing in croco_inter.in
USING DT = 200
USING NFAST = 60
USING NUMTIMES = 13392
USING NUMAVG = 432
USING NUMHIS = 13392
USING NUMRST = 13392
USING NUMRECINI = 1

Computing for Y2013M01
vie 04 ago 2023 14:44:24 -03
vie 04 ago 2023 14:44:24 -03
Test croco_Y2013M01.out

Warning: month not finished properly

      NTRA_T3DMIX
      SPONGE_GRID
      SPONGE_DIF2
      SPONGE_VIS2
      LMD_SKPP2005
      NF_CLOBBER

NUMBER OF THREADS: 8 BLOCKING: 1 x 8.

GET_GRID ERROR: Cannot open input NetCDF file: croco_grd.nc

MAIN - number of records written into history file(s): 0
number of records written into restart file(s): 0
number of records written into averages file(s): 0

ERROR: Abnormal termination: netCDF INPUT

and the croco_inter.in and the run_croco_inter.bash files, but I think it should be other the reason of the error
croco_inter.in(/upfiles/16911709621016606.in)

Thanks!!