HAMILTON HARBOUR 720 ntimes Total number of timesteps for 3D equations. 10.00 dt Timestep [sec] for 3D equations 200 ndtfast Number of 2D timesteps within each 3D step. 1 ninfo Number of timesteps between runtime diagnostics. WARNING: Unrecognized keyword: time_stepping_nbq --> DISREGARDED. 5.000E+00 theta_s S-coordinate surface control parameter. 2.000E+00 theta_b S-coordinate bottom control parameter. 5.000E+00 Tcline S-coordinate surface/bottom layer width used in vertical coordinate stretching, meters. WARNING: Unrecognized keyword: start_date --> DISREGARDED. WARNING: Unrecognized keyword: end_date --> DISREGARDED. WARNING: Unrecognized keyword: xios_origin_date --> DISREGARDED. WARNING: Unrecognized keyword: output_time_steps --> DISREGARDED. Grid File: hh_bathy_utm.nc Restart File: hh_croco_rst.nc nrst = 720 rec/file: -1 History File: croco_his.nc Create new: T nwrt = 72 rec/file = 0 WARNING: Unrecognized keyword: averages --> DISREGARDED. Fields to be saved in history file: (T/F) T write zeta free-surface. T write UBAR 2D U-momentum component. T write VBAR 2D V-momentum component. T write U 3D U-momentum component. T write V 3D V-momentum component. T write T( 1) Tracer of index 1. F write RHO Density anomaly. F write Omega Omega vertical velocity. T write W True vertical velocity. F write Akv Vertical viscosity. T write Akt Vertical diffusivity for temperature. T write Bostr Bottom Stress. F write Bustr U-Bottom Stress. F write Bvstr V-Bottom Stress. T write Wstress Wind Stress. T write U-Wstress comp. U-Wind Stress. T write V-Wstress comp. V-Wind Stress. T write Shflx [W/m2] Surface net heat flux T write Shflx_rsw [W/m2] Short-wave surface radiation WARNING: Unrecognized keyword: gls_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: primary_averages --> DISREGARDED. WARNING: Unrecognized keyword: auxiliary_averages --> DISREGARDED. WARNING: Unrecognized keyword: gls_averages --> DISREGARDED. 1000.0000 rho0 Boussinesq approximation mean density, kg/m3. 0.000E+00 visc2 Horizontal Laplacian mixing coefficient [m2/s] for momentum. 0.000E+00 tnu2( 1) Horizontal Laplacian mixing coefficient (m2/s) for tracer 1. WARNING: Unrecognized keyword: tracer_diff4 --> DISREGARDED. 20 levsfrc Deepest level to apply surface stress as a bodyforce. 1 levbfrc Shallowest level to apply bottom stress as a bodyforce. 0.000E+00 Akv_bak Background vertical viscosity coefficient, m2/s. 0.000E+00 Akt_bak( 1) Background vertical mixing coefficient, m2/s, for tracer 1. 0.000E+00 rdrg Linear bottom drag coefficient (m/si). 0.000E+00 rdrg2 Quadratic bottom drag coefficient. 1.000E-02 Zobt Bottom roughness for logarithmic law (m). 1.000E-04 Cdb_min Minimum bottom drag coefficient. 1.000E-01 Cdb_max Maximum bottom drag coefficient. 1.00 gamma2 Slipperiness parameter: free-slip +1, or no-slip -1. 0.0000 T0 Background value for potential temperature (Celsius). 0.0000 S0 Background salinity (PSU), constant. 30.0000 R0 Background density (kg/m3) used in linear EOS. 0.2800 Tcoef Thermal expansion coefficient (kg/m3/Celsius). 0.0000 Scoef Saline contraction coefficient (kg/m3/PSU). WARNING: Unrecognized keyword: sponge --> DISREGARDED. WARNING: Unrecognized keyword: nudg_cof --> DISREGARDED. WARNING: Unrecognized keyword: diag_mld_dens --> DISREGARDED. WARNING: Unrecognized keyword: diagnostics --> DISREGARDED. WARNING: Unrecognized keyword: diag_avg --> DISREGARDED. WARNING: Unrecognized keyword: diag3D_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag2D_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag3D_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag2D_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagnosticsM --> DISREGARDED. WARNING: Unrecognized keyword: diagM_avg --> DISREGARDED. WARNING: Unrecognized keyword: diagM_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagM_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: surf --> DISREGARDED. WARNING: Unrecognized keyword: surf_avg --> DISREGARDED. WARNING: Unrecognized keyword: surf_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: surf_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagnostics_bio --> DISREGARDED. WARNING: Unrecognized keyword: diagbio_avg --> DISREGARDED. WARNING: Unrecognized keyword: diagbioFlux_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioVSink_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioGasExc_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioFlux_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioVSink_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioGasExc_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: biology --> DISREGARDED. WARNING: Unrecognized keyword: wkb_boundary --> DISREGARDED. WARNING: Unrecognized keyword: wkb_wwave --> DISREGARDED. WARNING: Unrecognized keyword: wkb_roller --> DISREGARDED. WARNING: Unrecognized keyword: wave_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: wave_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: wci_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: wci_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: sediments --> DISREGARDED. WARNING: Unrecognized keyword: sediment_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: bbl_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: floats --> DISREGARDED. WARNING: Unrecognized keyword: float_fields --> DISREGARDED. WARNING: Unrecognized keyword: stations --> DISREGARDED. WARNING: Unrecognized keyword: station_fields --> DISREGARDED. WARNING: Unrecognized keyword: psource --> DISREGARDED. WARNING: Unrecognized keyword: psource_ncfile --> DISREGARDED. WARNING: Unrecognized keyword: online --> DISREGARDED. Activated C-preprocessing Options: HAMILTON_HARBOR CURVGRID MASKING NEW_S_COORD SOLVE3D UV_ADV UV_HADV_UP3 UV_VIS2 UV_VADV_SPLINES TS_HADV_UP3 TS_DIF2 TS_MIX_S TS_VADV_AKIMA LIMIT_BSTRESS BODYFORCE ANA_BTFLUX ANA_INITIAL ANA_STFLUX ANA_SMFLUX NO_FRCFILE MPI_COMM_WORLD M2FILTER_POWER TRACERS TEMPERATURE HZR VAR_RHO_2D RESET_RHO0 UV_MIX_S NTRA_T3DMIX NF_CLOBBER ENDDOLOOP2D DOLOOP2D_R DOLOOP2D NUMBER OF THREADS: 1 BLOCKING: 1 x 1. hmin hmax grdmin grdmax Cu_min Cu_max 0.000000 24.109654 0.400000000E+02 0.400000000E+02 0.00553681 0.02718661 volume= 1.991243275665822327137E+08 open_cross= 0.000000000000000000000E+00 Vertical S-coordinate System: level S-coord Cs-curve at_hmin over_slope at_hmax 20 0.0000000 0.0000000 0.000 0.000 0.000 19 -0.0500000 -0.0009921 -0.000 -0.185 -0.227 18 -0.1000000 -0.0040253 -0.000 -0.388 -0.494 17 -0.1500000 -0.0092730 -0.000 -0.609 -0.806 16 -0.2000000 -0.0170317 -0.000 -0.852 -1.168 15 -0.2500000 -0.0277315 -0.000 -1.120 -1.589 14 -0.3000000 -0.0419491 -0.000 -1.418 -2.080 13 -0.3500000 -0.0604221 -0.000 -1.752 -2.656 12 -0.4000000 -0.0840589 -0.000 -2.130 -3.335 11 -0.4500000 -0.1139399 -0.000 -2.561 -4.139 10 -0.5000000 -0.1512980 -0.000 -3.056 -5.092 9 -0.5500000 -0.1974649 -0.000 -3.626 -6.221 8 -0.6000000 -0.2537619 -0.000 -4.283 -7.552 7 -0.6500000 -0.3213115 -0.000 -5.035 -9.108 6 -0.7000000 -0.4007458 -0.000 -5.889 -10.901 5 -0.7500000 -0.4918042 -0.000 -6.841 -12.926 4 -0.8000000 -0.5928514 -0.000 -7.879 -15.151 3 -0.8500000 -0.7004238 -0.000 -8.972 -17.506 2 -0.9000000 -0.8090191 -0.000 -10.074 -19.882 1 -0.9500000 -0.9114428 -0.000 -11.124 -22.134 0 -1.0000000 -1.0000000 -0.000 -12.055 -24.110 Time splitting: ndtfast =200 nfast =273 Maximum grid stiffness ratios: rx0 = 0.20707687536327110 rx1 = 6.3702627625317909 1026.2484 rho0 Reset Boussinesq approximation mean density, kg/m3. DEF_HIS/AVG - Created new netCDF file 'croco_his.nc'. WRT_GRID -- wrote grid data into file 'croco_his.nc'. WRT_HIS -- wrote history fields into time record = 1 / 1 MAIN: started time-stepping STEP time[DAYS] KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOLUME trd 0 0.00000 0.000000000E+00-4.0339426E-02-4.0339426E-02 1.9912433E+08 0 1 0.00012 NaN NaN NaN NaN 0 MAIN - number of records written into history file(s): 1 number of records written into restart file(s): 0 MAIN: Abnormal termination: BLOWUP