Southern Benguela Interannual Run 3 km 13392 ntimes Total number of timesteps for 3D equations. 200.00 dt Timestep [sec] for 3D equations 45 ndtfast Number of 2D timesteps within each 3D step. 15 ninfo Number of timesteps between runtime diagnostics. 5.000E+00 theta_s S-coordinate surface control parameter. 0.000E+00 theta_b S-coordinate bottom control parameter. 1.000E+01 Tcline S-coordinate surface/bottom layer width used in vertical coordinate stretching, meters. WARNING: Unrecognized keyword: run_start_date --> DISREGARDED. WARNING: Unrecognized keyword: run_end_date --> DISREGARDED. WARNING: Unrecognized keyword: output_time_steps --> DISREGARDED. Grid File: croco_grd.nc WARNING: Unrecognized keyword: forcing --> DISREGARDED. Bulk Data File: croco_blk.nc WARNING: Unrecognized keyword: climatology --> DISREGARDED. Boundary File: croco_bry.nc Initial State File: croco_ini.nc Record: 1 Restart File: croco_rst.nc nrst = 432 rec/file: 0 History File: croco_his.nc Create new: T nwrt = 432 rec/file = 0 1 ntsavg Starting timestep for the accumulation of output time-averaged data. 1296 navg Number of timesteps between writing of time-averaged data into averages file. Averages File: croco_avg.nc rec/file = 0 Fields to be saved in history file: (T/F) T write zeta free-surface. T write UBAR 2D U-momentum component. T write VBAR 2D V-momentum component. T write U 3D U-momentum component. T write V 3D V-momentum component. T write T( 1) Tracer of index 1. T write T( 2) Tracer of index 2. T write T( 3) Tracer of index 3. T write T( 4) Tracer of index 4. T write T( 5) Tracer of index 5. T write T( 6) Tracer of index 6. T write T( 7) Tracer of index 7. T write T( 8) Tracer of index 8. T write T( 9) Tracer of index 9. T write T(10) Tracer of index10. T write T(11) Tracer of index11. T write T(12) Tracer of index12. T write T(13) Tracer of index13. T write T(14) Tracer of index14. T write T(15) Tracer of index15. T write T(16) Tracer of index16. T write T(17) Tracer of index17. T write T(18) Tracer of index18. T write T(19) Tracer of index19. T write T(20) Tracer of index20. T write T(21) Tracer of index21. T write T(22) Tracer of index22. T write T(23) Tracer of index23. T write T(24) Tracer of index24. T write T(25) Tracer of index25. T write T(26) Tracer of index26. F write RHO Density anomaly. F write Omega Omega vertical velocity. T write W True vertical velocity. F write Akv Vertical viscosity. T write Akt Vertical diffusivity for temperature. F write Aks Vertical diffusivity for salinity. F write Visc3d Horizontal diffusivity. T write Hbl Depth of model boundary layer. T write Hbbl Depth of bottom planetary boundary layer. T write shflx_rlw [W/m2] Long Wave heat flux. T write shflx_lat [W/m2] Latent heat flux. T write shflx_sen [W/m2] Sensible heat flux T write Bostr Bottom Stress. T write Wstress Wind Stress. T write U-Wstress comp. U-Wind Stress. T write V-Wstress comp. V-Wind Stress. T write Shflx [W/m2] Surface net heat flux T write Swflx [cm/day] Surface freshwater flux (E-P) T write Shflx_rsw [W/m2] Short-wave surface radiation WARNING: Unrecognized keyword: gls_history_fields --> DISREGARDED. Fields to be saved in averages file: (T/F) T write zeta free-surface. T write UBAR 2D U-momentum component. T write VBAR 2D V-momentum component. T write U 3D U-momentum component. T write V 3D V-momentum component. T write T( 1) Tracer of index 1. T write T( 2) Tracer of index 2. T write T( 3) Tracer of index 3. T write T( 4) Tracer of index 4. T write T( 5) Tracer of index 5. T write T( 6) Tracer of index 6. T write T( 7) Tracer of index 7. T write T( 8) Tracer of index 8. T write T( 9) Tracer of index 9. T write T(10) Tracer of index10. T write T(11) Tracer of index11. T write T(12) Tracer of index12. T write T(13) Tracer of index13. T write T(14) Tracer of index14. T write T(15) Tracer of index15. T write T(16) Tracer of index16. T write T(17) Tracer of index17. T write T(18) Tracer of index18. T write T(19) Tracer of index19. T write T(20) Tracer of index20. T write T(21) Tracer of index21. T write T(22) Tracer of index22. T write T(23) Tracer of index23. T write T(24) Tracer of index24. T write T(25) Tracer of index25. T write T(26) Tracer of index26. F write RHO Density anomaly F write Omega Omega vertical velocity. T write W True vertical velocity. F write Akv Vertical viscosity T write Akt Vertical diffusivity for temperature. F write Aks Vertical diffusivity for salinity. F write bvf Brunt Vaisala Frequency. T write diff3d Horizontal diffusivity T write Hbl Depth of model boundary layer T write Hbbl Depth of the bottom planetary boundary layer T write shflx_rlw [W/m2] Long Wave heat flux. T write shflx_lat[W/m2] Latente heat flux. T write shflx_sen [W/m2] Sensible heat flux. T write Bostr Bottom Stress. T write Wstr Wind Stress. T write U-Wstress comp. U-Wind Stress. T write V-Wstress comp. V-Wind Stress. T write Shflx [W/m2] Surface net heat flux. T write Swflx [cm/day] Surface freshwater flux (E-P) T write Shflx_rsw [W/m2] Short-wave surface radiation. WARNING: Unrecognized keyword: gls_averages --> DISREGARDED. 1025.0000 rho0 Boussinesq approximation mean density, kg/m3. 0.000E+00 visc2 Horizontal Laplacian mixing coefficient [m2/s] for momentum. WARNING: Unrecognized keyword: lateral_visc --> DISREGARDED. 0.000E+00 tnu2( 1) Horizontal Laplacian mixing coefficient (m2/s) for tracer 1. 0.000E+00 tnu2( 2) Horizontal Laplacian mixing coefficient (m2/s) for tracer 2. 0.000E+00 tnu2( 3) Horizontal Laplacian mixing coefficient (m2/s) for tracer 3. 0.000E+00 tnu2( 4) Horizontal Laplacian mixing coefficient (m2/s) for tracer 4. 0.000E+00 tnu2( 5) Horizontal Laplacian mixing coefficient (m2/s) for tracer 5. 0.000E+00 tnu2( 6) Horizontal Laplacian mixing coefficient (m2/s) for tracer 6. 0.000E+00 tnu2( 7) Horizontal Laplacian mixing coefficient (m2/s) for tracer 7. 0.000E+00 tnu2( 8) Horizontal Laplacian mixing coefficient (m2/s) for tracer 8. 0.000E+00 tnu2( 9) Horizontal Laplacian mixing coefficient (m2/s) for tracer 9. 0.000E+00 tnu2(10) Horizontal Laplacian mixing coefficient (m2/s) for tracer 10. 0.000E+00 tnu2(11) Horizontal Laplacian mixing coefficient (m2/s) for tracer 11. 0.000E+00 tnu2(12) Horizontal Laplacian mixing coefficient (m2/s) for tracer 12. 0.000E+00 tnu2(13) Horizontal Laplacian mixing coefficient (m2/s) for tracer 13. 0.000E+00 tnu2(14) Horizontal Laplacian mixing coefficient (m2/s) for tracer 14. 0.000E+00 tnu2(15) Horizontal Laplacian mixing coefficient (m2/s) for tracer 15. 0.000E+00 tnu2(16) Horizontal Laplacian mixing coefficient (m2/s) for tracer 16. 0.000E+00 tnu2(17) Horizontal Laplacian mixing coefficient (m2/s) for tracer 17. 0.000E+00 tnu2(18) Horizontal Laplacian mixing coefficient (m2/s) for tracer 18. 0.000E+00 tnu2(19) Horizontal Laplacian mixing coefficient (m2/s) for tracer 19. 0.000E+00 tnu2(20) Horizontal Laplacian mixing coefficient (m2/s) for tracer 20. 0.000E+00 tnu2(21) Horizontal Laplacian mixing coefficient (m2/s) for tracer 21. 0.000E+00 tnu2(22) Horizontal Laplacian mixing coefficient (m2/s) for tracer 22. 0.000E+00 tnu2(23) Horizontal Laplacian mixing coefficient (m2/s) for tracer 23. 0.000E+00 tnu2(24) Horizontal Laplacian mixing coefficient (m2/s) for tracer 24. 0.000E+00 tnu2(25) Horizontal Laplacian mixing coefficient (m2/s) for tracer 25. 0.000E+00 tnu2(26) Horizontal Laplacian mixing coefficient (m2/s) for tracer 26. 0.000E+00 tnu4( 1) Horizontal biharmonic mixing coefficient [m4/s] for tracer 1. 0.000E+00 tnu4( 2) Horizontal biharmonic mixing coefficient [m4/s] for tracer 2. 0.000E+00 tnu4( 3) Horizontal biharmonic mixing coefficient [m4/s] for tracer 3. 0.000E+00 tnu4( 4) Horizontal biharmonic mixing coefficient [m4/s] for tracer 4. 0.000E+00 tnu4( 5) Horizontal biharmonic mixing coefficient [m4/s] for tracer 5. 0.000E+00 tnu4( 6) Horizontal biharmonic mixing coefficient [m4/s] for tracer 6. 0.000E+00 tnu4( 7) Horizontal biharmonic mixing coefficient [m4/s] for tracer 7. 0.000E+00 tnu4( 8) Horizontal biharmonic mixing coefficient [m4/s] for tracer 8. 0.000E+00 tnu4( 9) Horizontal biharmonic mixing coefficient [m4/s] for tracer 9. 0.000E+00 tnu4(10) Horizontal biharmonic mixing coefficient [m4/s] for tracer 10. 0.000E+00 tnu4(11) Horizontal biharmonic mixing coefficient [m4/s] for tracer 11. 0.000E+00 tnu4(12) Horizontal biharmonic mixing coefficient [m4/s] for tracer 12. 0.000E+00 tnu4(13) Horizontal biharmonic mixing coefficient [m4/s] for tracer 13. 0.000E+00 tnu4(14) Horizontal biharmonic mixing coefficient [m4/s] for tracer 14. 0.000E+00 tnu4(15) Horizontal biharmonic mixing coefficient [m4/s] for tracer 15. 0.000E+00 tnu4(16) Horizontal biharmonic mixing coefficient [m4/s] for tracer 16. 0.000E+00 tnu4(17) Horizontal biharmonic mixing coefficient [m4/s] for tracer 17. 0.000E+00 tnu4(18) Horizontal biharmonic mixing coefficient [m4/s] for tracer 18. 0.000E+00 tnu4(19) Horizontal biharmonic mixing coefficient [m4/s] for tracer 19. 0.000E+00 tnu4(20) Horizontal biharmonic mixing coefficient [m4/s] for tracer 20. 0.000E+00 tnu4(21) Horizontal biharmonic mixing coefficient [m4/s] for tracer 21. 0.000E+00 tnu4(22) Horizontal biharmonic mixing coefficient [m4/s] for tracer 22. 0.000E+00 tnu4(23) Horizontal biharmonic mixing coefficient [m4/s] for tracer 23. 0.000E+00 tnu4(24) Horizontal biharmonic mixing coefficient [m4/s] for tracer 24. 0.000E+00 tnu4(25) Horizontal biharmonic mixing coefficient [m4/s] for tracer 25. 0.000E+00 tnu4(26) Horizontal biharmonic mixing coefficient [m4/s] for tracer 26. WARNING: Unrecognized keyword: vertical_mixing --> DISREGARDED. 3.000E-04 rdrg Linear bottom drag coefficient (m/si). 0.000E+00 rdrg2 Quadratic bottom drag coefficient. 0.000E+00 Zobt Bottom roughness for logarithmic law (m). 1.000E-04 Cdb_min Minimum bottom drag coefficient. 1.000E-01 Cdb_max Maximum bottom drag coefficient. -1.00 gamma2 Slipperiness parameter: free-slip +1, or no-slip -1. SPONGE_GRID is defined: x_sponge parameter in sponge/nudging layer is set generically in set_nudgcof.F routine 1.157E-05 tauT_in Nudging coefficients [sec^-1] 3.215E-08 tauT_out Nudging coefficients [sec^-1] 3.858E-06 tauM_in Nudging coefficients [sec^-1] 3.215E-08 tauM_out Nudging coefficients [sec^-1] WARNING: Unrecognized keyword: diagnostics --> DISREGARDED. WARNING: Unrecognized keyword: diag_avg --> DISREGARDED. WARNING: Unrecognized keyword: diag3D_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag2D_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag3D_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diag2D_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagnosticsM --> DISREGARDED. WARNING: Unrecognized keyword: diagM_avg --> DISREGARDED. WARNING: Unrecognized keyword: diagM_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagM_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_vrt_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_ek_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: surf --> DISREGARDED. WARNING: Unrecognized keyword: surf_avg --> DISREGARDED. WARNING: Unrecognized keyword: surf_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: surf_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_pv_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_avg --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diags_eddy_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagnostics_bio --> DISREGARDED. WARNING: Unrecognized keyword: diagbio_avg --> DISREGARDED. WARNING: Unrecognized keyword: diagbioFlux_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioVSink_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioGasExc_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioFlux_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioVSink_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: diagbioGasExc_average_fields --> DISREGARDED. Biology Forcing Data File: croco_frcbio.nc WARNING: Unrecognized keyword: wkb_boundary --> DISREGARDED. WARNING: Unrecognized keyword: wkb_wwave --> DISREGARDED. WARNING: Unrecognized keyword: wkb_roller --> DISREGARDED. WARNING: Unrecognized keyword: wave_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: wave_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: wci_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: wci_average_fields --> DISREGARDED. WARNING: Unrecognized keyword: sediments --> DISREGARDED. WARNING: Unrecognized keyword: sediment_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: bbl_history_fields --> DISREGARDED. WARNING: Unrecognized keyword: floats --> DISREGARDED. WARNING: Unrecognized keyword: float_fields --> DISREGARDED. WARNING: Unrecognized keyword: stations --> DISREGARDED. WARNING: Unrecognized keyword: station_fields --> DISREGARDED. WARNING: Unrecognized keyword: psource --> DISREGARDED. WARNING: Unrecognized keyword: psource_ncfile --> DISREGARDED. WARNING: Unrecognized keyword: online --> DISREGARDED. Activated C-preprocessing Options: REGIONAL SBUS_3km MPI OBC_EAST OBC_WEST OBC_NORTH OBC_SOUTH BIOLOGY CURVGRID SPHERICAL MASKING NEW_S_COORD SOLVE3D UV_COR UV_ADV SALINITY NONLIN_EOS UV_HADV_UP3 UV_VADV_SPLINES TS_HADV_RSUP3 TS_DIF4 TS_VADV_AKIMA SPONGE LMD_MIXING LMD_SKPP LMD_BKPP LMD_RIMIX LMD_CONVEC LMD_NONLOCAL BULK_FLUX BULK_FAIRALL BULK_LW BULK_EP BULK_SMFLUX SMFLUX_CFB FRC_BRY Z_FRC_BRY M2_FRC_BRY M3_FRC_BRY T_FRC_BRY ANA_BSFLUX ANA_BTFLUX OBC_M2CHARACT OBC_M3ORLANSKI OBC_TORLANSKI AVERAGES AVERAGES_K BIO_HADV_WENO5 PISCES key_pisces SPLIT_EOS TS_HADV_C4 M2FILTER_POWER HZR VAR_RHO_2D UV_MIX_S DIF_COEF_3D TS_MIX_ISO TS_MIX_IMP TS_MIX_ISO_FILT NTRA_T3DMIX SPONGE_GRID SPONGE_DIF2 SPONGE_VIS2 BULK_SM_UPDATE CFB_STRESS STFLUX_CFB LMD_SKPP2005 key_trc_pisces key_passivetrc NF_CLOBBER NUMBER OF THREADS: 1 BLOCKING: 1 x 1. trc_sms_pisces : read PISCES namelists ~~~~~~~~~~~~~~