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AGRIF compile error. LIB conv compilation fails?

asked 2022-10-25 13:52:34 +0200

Hi Croco users,

I am using the latest released croco 1.2.1. My configuration without AGRIF compiles and runs fine. Then I follow the documentation steps to create the nested grid and forcing, bulk, initial, and with the nestgui.m utility without any errors and all the files are created.

When running jobcomp with AGRIF defined I get a lot of warning such as:


Compile conv...

make -C LIB conv make[1]: Entering directory '/home/konstantinos/Programs/Croco/CONFIGS/ROTATED/Compile/AGRIF/LIB' cc -Wno-implicit-function-declaration -c main.c -o main.o convert.y: In function ‘main’: convert.y:310:33: warning: ‘%s’ directive writing 16 bytes into a region of size between 0 and 999 [-Wformat-overflow=] convert.y:310:13: note: ‘sprintf’ output between 18 and 1017 bytes into a destination of size 1000 cc main.o WriteInFile.o toamr.o fortran.o dependfile.o SubLoopCreation.o WorkWithlistvarindoloop.o WorkWithvarofsubroutineliste.o WorkWithParameterlist.o Writedeclarations.o WorkWithglobliste.o UtilFortran.o UtilNotGridDep.o WorkWithlistdatavariable.o DiversListe.o UtilAgrif.o WorkWithAllocatelist.o UtilCharacter.o UtilListe.o UtilFile.o WorkWithlistofmodulebysubroutine.o WorkWithlistmoduleinfile.o WorkWithlistofcoupled.o -o ./conv /usr/bin/ld: WriteInFile.o:(.bss+0x0): multiple definition of curvar'; main.o:(.bss+0x0): first defined here /usr/bin/ld: WriteInFile.o:(.bss+0x8): multiple definition ofList_ModuleUsedInModuleUsed_Var'; main.o:(.bss+0x8): first defined here

And finally I get an error: collect2: error: ld returned 1 exit status make[1]: * [Makefile:34: conv] Error 1 make[1]: Leaving directory '/home/konstantinos/Programs/Croco/CONFIGS/ROTATED/Compile/AGRIF/LIB' make: * [Makefile:32: conv] Error 2 make: Leaving directory '/home/konstantinos/Programs/Croco/CONFIGS/ROTATED/Compile/AGRIF' mv: cannot stat 'AGRIF/conv': No such file or directory

I tried with both gfortran, mpif90, gmake amd also with ifort, mpiifort and make and always the error is the same.

The ifort compiler has the following flags: FFLAGS1="-O3 -fno-alias -i4 -r8 -fp-model precise" And I have added the workaround “-fallow-argument-mismatch” in the new gfortran compiler: FFLAGS1="-O3 -fdefault-real-8 -fdefault-double-8 -fallow-argument-mismatch"

The compiler versions are: ifort --version ifort (IFORT) 2021.7.0 20220726 Copyright (C) 1985-2022 Intel Corporation. All rights reserved.

gfortran --version GNU Fortran (Ubuntu 11.2.0-19ubuntu1) 11.2.0 Copyright (C) 2021 Free Software Foundation, Inc.

Thank you for your advice Konstantinos

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answered 2022-10-26 07:01:31 +0200

I discovered that the same configuration compiles successfully on older Desktop PC with the compiler: gfortran --version GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0

So apparently the new: GNU Fortran (Ubuntu 11.2.0-19ubuntu1) 11.2.0 doesn't like AGRIF...? But also the Intel new compiler ifort (IFORT) 2021.7.0 20220726 doesn't work neither...

So... avoid new compilers!

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Asked: 2022-10-25 13:52:34 +0200

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Last updated: Oct 26 '22