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In principle, yes. It might not be trivial.

CROCO uses only one forcing file, where tide information is included, and only one boundary file. River runnof is added in an external file (croco_runoff.nc).

You might have problems in the variable names are different, but that is something that can be fixed using NCO tools.

Compare and post the output from

ncdump -h

for your ROMS_Rutgers and the files produced for the default Benguela case, to see if we can spot the differences.